package src;

import org.biomoby.client.CentralImpl;
import org.biomoby.client.MobyRequest;
import org.biomoby.shared.Central;
import org.biomoby.shared.MobyNamespace;
import org.biomoby.shared.MobySecondaryData;
import org.biomoby.shared.MobyService;
import org.biomoby.shared.data.MobyContentInstance;
import org.biomoby.shared.data.MobyDataObject;
import org.biomoby.shared.data.MobyDataSecondaryInstance;

public class TestGetKolmogrovQualityControlStatisticForSlidesInNASCExperimentId {
	
	public static void main(String[] args) throws Exception{
	
		String nascExpid = "56";
		String imgProcAlgorithm="MAS5"; // Other options "RMA", "GCRMA"
		String serviceEndPoint = "http://mobycentral.icapture.ubc.ca/cgi-bin/MOBY05/mobycentral.pl";
	
		Central worker = new CentralImpl();
	
		// Make template for finding services
		MobyService service = new MobyService();
		service.setURL(serviceEndPoint);
		service.setName("getKolmogrovQualityControlStatisticForSlidesInNASCExperimentId");
		service.setAuthority("ssg.uab.edu");
    
		//Setup Primary Input - NASCReferenceNumber
		MobyDataObject input = new MobyDataObject("NASCArraysReferenceNumber", nascExpid);
		input.setId(nascExpid);
		MobyNamespace nascArrayNamespace = new MobyNamespace("NASCArraysReferenceNumber");
		input.setNamespaces(new MobyNamespace[]{nascArrayNamespace});

		//Setup Secondary Input - Imagaprocessing Algorithm ["RMA", "MAS5", "GCRMA"]
		MobySecondaryData secondaryData = new MobySecondaryData(MobySecondaryData.STRING_TYPE);
		secondaryData.setName("imageProcAlgorithm");
		
		
		MobyDataSecondaryInstance secondaryInstance = new MobyDataSecondaryInstance(secondaryData);
		secondaryInstance.setDefaultValue(imgProcAlgorithm);
		secondaryInstance.setValue(imgProcAlgorithm);
		System.out.println("Finding services matching template: "+service.getName());
     
		MobyService[] validServices = worker.findService(service);
     
		// Make sure we have a service to run for this input
	    	if(validServices == null || validServices.length == 0){
	    		System.err.println("Could not find any valid services");
	    	}
	    	else{
	    		System.out.println("Found some services");
	    	}
	    
	    	// Prepare MobyRequest. Set primary input and secondary inputs
	    	MobyRequest request = new MobyRequest(worker);
	    	request.setDebugMode(true);
	    	request.setService(validServices[0]);
	    	request.setInput(input);
	    	
	    	request.setSecondaryInput(new MobyDataSecondaryInstance[]{secondaryInstance});	
	    	
	    	MobyContentInstance responses = request.invokeService();
	    
	    	System.out.println(responses.toXML());
	}
}